MSFragger Upgrade Tool
- Select your desired download and upload your current MSFragger.jar.
- Original MSFragger.jar can be obtained from here.
- Take care to upload the jar and not the zip file.
- Since 20190628, MSFragger supports reading Thermo RAW file directly. Select zip option if you need this function. The ext folder should be in the same folder as the JAR file if you want to process Thermo RAW file.